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n3:434757

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Cassarini <i>et al.</i> (2022)

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schema:datePublished

2022-01-01

dct:title

Cassarini <i>et al.</i> (2022)

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_:vb70014737

dct:abstract

<jats:p>Strain RHZ10<jats:sup>T</jats:sup> was isolated from an oak rhizosphere sampled in Reims, France, and characterized to assess its taxonomy. Based on 16S rRNA gene sequence similarity, strain RHZ10<jats:sup>T</jats:sup> was affiliated to the genus <jats:italic> <jats:named-content content-type=%22genus%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6817%22 xlink:type=%22simple%22>Streptomyces</jats:ext-link> </jats:named-content> </jats:italic> and the closest species were <jats:italic> <jats:named-content content-type=%22species%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6855%22 xlink:type=%22simple%22>Streptomyces anulatus</jats:ext-link> </jats:named-content> </jats:italic> NRRL B-2000<jats:sup>T</jats:sup> and <jats:italic> <jats:named-content content-type=%22species%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.24688%22 xlink:type=%22simple%22>Streptomyces pratensis</jats:ext-link> </jats:named-content> </jats:italic> ch24<jats:sup>T</jats:sup>. Average nucleotide identity and digital DNA–DNA hybridization values were 77.3–92.4 % and 23.0–50.9 %, respectively, when compared to the type strains of fully sequenced related species having a 16S rRNA gene sequence similarity over 98 %. These data suggested that strain RHZ10<jats:sup>T</jats:sup> represented a novel species within the genus <jats:italic> <jats:named-content content-type=%22genus%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6817%22 xlink:type=%22simple%22>Streptomyces</jats:ext-link> </jats:named-content> </jats:italic>. The genome of RHZ10<jats:sup>T</jats:sup> was 8.0 Mbp long, had 7  894 predicted coding genes, and a G+C content of 71.7 mol%. Cultures of RHZ10<jats:sup>T</jats:sup> on ISP 2 medium mostly led to the production a green pigmentation of the core of its colonies in the vegetative mycelium, surrounded by white pigmentation of the aerial mycelium. The main fatty acids of RHZ10<jats:sup>T</jats:sup> were anteiso-C<jats:sub>15 : 0</jats:sub>, iso-C<jats:sub>16 : 0</jats:sub>, anteiso-C<jats:sub>17 : 0</jats:sub> and C<jats:sub>16 : 0</jats:sub>. Polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, unidentified lipids, unidentified phospholipids, unidentified aminolipids and unidentified glycolipids. Its main quinones were MK-9(H<jats:sub>6</jats:sub>) (69.3 %), MK-9(H<jats:sub>4</jats:sub>) (17.3 %) and MK-9(H<jats:sub>8</jats:sub>) (17.0%). Phylogenetic, physiological and chemotaxonomic studies clearly supported that strain RHZ10<jats:sup>T</jats:sup> represents a novel species within the genus <jats:italic> <jats:named-content content-type=%22genus%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6817%22 xlink:type=%22simple%22>Streptomyces</jats:ext-link> </jats:named-content> </jats:italic>, for which the name <jats:italic>Streptomyces durocortorensis</jats:italic> sp. nov. is proposed and the type strain is RHZ10<jats:sup>T</jats:sup> (=DSM 112634<jats:sup>T</jats:sup>=LMG 32187<jats:sup>T</jats:sup>=CIP 111907<jats:sup>T</jats:sup>).</jats:p>

bibo:abstract

<jats:p>Strain RHZ10<jats:sup>T</jats:sup> was isolated from an oak rhizosphere sampled in Reims, France, and characterized to assess its taxonomy. Based on 16S rRNA gene sequence similarity, strain RHZ10<jats:sup>T</jats:sup> was affiliated to the genus <jats:italic> <jats:named-content content-type=%22genus%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6817%22 xlink:type=%22simple%22>Streptomyces</jats:ext-link> </jats:named-content> </jats:italic> and the closest species were <jats:italic> <jats:named-content content-type=%22species%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6855%22 xlink:type=%22simple%22>Streptomyces anulatus</jats:ext-link> </jats:named-content> </jats:italic> NRRL B-2000<jats:sup>T</jats:sup> and <jats:italic> <jats:named-content content-type=%22species%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.24688%22 xlink:type=%22simple%22>Streptomyces pratensis</jats:ext-link> </jats:named-content> </jats:italic> ch24<jats:sup>T</jats:sup>. Average nucleotide identity and digital DNA–DNA hybridization values were 77.3–92.4 % and 23.0–50.9 %, respectively, when compared to the type strains of fully sequenced related species having a 16S rRNA gene sequence similarity over 98 %. These data suggested that strain RHZ10<jats:sup>T</jats:sup> represented a novel species within the genus <jats:italic> <jats:named-content content-type=%22genus%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6817%22 xlink:type=%22simple%22>Streptomyces</jats:ext-link> </jats:named-content> </jats:italic>. The genome of RHZ10<jats:sup>T</jats:sup> was 8.0 Mbp long, had 7  894 predicted coding genes, and a G+C content of 71.7 mol%. Cultures of RHZ10<jats:sup>T</jats:sup> on ISP 2 medium mostly led to the production a green pigmentation of the core of its colonies in the vegetative mycelium, surrounded by white pigmentation of the aerial mycelium. The main fatty acids of RHZ10<jats:sup>T</jats:sup> were anteiso-C<jats:sub>15 : 0</jats:sub>, iso-C<jats:sub>16 : 0</jats:sub>, anteiso-C<jats:sub>17 : 0</jats:sub> and C<jats:sub>16 : 0</jats:sub>. Polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, unidentified lipids, unidentified phospholipids, unidentified aminolipids and unidentified glycolipids. Its main quinones were MK-9(H<jats:sub>6</jats:sub>) (69.3 %), MK-9(H<jats:sub>4</jats:sub>) (17.3 %) and MK-9(H<jats:sub>8</jats:sub>) (17.0%). Phylogenetic, physiological and chemotaxonomic studies clearly supported that strain RHZ10<jats:sup>T</jats:sup> represents a novel species within the genus <jats:italic> <jats:named-content content-type=%22genus%22> <jats:ext-link xmlns:xlink=%22http://www.w3.org/1999/xlink%22 ext-link-type=%22uri%22 xlink:href=%22http://doi.org/10.1601/nm.6817%22 xlink:type=%22simple%22>Streptomyces</jats:ext-link> </jats:named-content> </jats:italic>, for which the name <jats:italic>Streptomyces durocortorensis</jats:italic> sp. nov. is proposed and the type strain is RHZ10<jats:sup>T</jats:sup> (=DSM 112634<jats:sup>T</jats:sup>=LMG 32187<jats:sup>T</jats:sup>=CIP 111907<jats:sup>T</jats:sup>).</jats:p>

dct:issued

2022-01-01

dct:bibliographicCitation

Cassarini, M., Rémond, C., Mühle, E., Clermont, D. &amp; Besaury, L. 2022. Streptomyces durocortorensis sp. nov., isolated from oak rhizosphere. <em>International Journal of Systematic and Evolutionary Microbiology</em>, 72(9).

bibo:doi

10.1099/ijsem.0.005480

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n6:pdf

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_:vb70014737

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n8:P356

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10.1099/ijsem.0.005480